Insofar as "theology" includes courses that presuppose the existence of the divine, take seriously the existence of God or Jesus, or prepare people for the ministry or to promulgate religious beliefs, then those courses not only have no place in a University, but are exercises in delusion. Now I think the higher-class divinity schools, like Chicago's and Harvard's, have very few of those courses, but there are some. They should not be part of a secular university. Maybe I'm missing something here, but it seems to me that Hitchens's razor is correct: "What can be asserted without evidence can also be dismissed without evidence." That applies to any form of theology that takes gods or superstitions as real. Universities should not be in the business of taking seriously those myths that have no evidence behind them. They can, of course, teach myths, but at no point should they imply that there is evidence for their truth. LINK
My position seems to be the same as Richard Dawkins, Jerry Coyne, Peter Boghossian and James Lindsay when it comes to ending the Philosophy of Religion (PoR) discipline in the secular universities. The classes covered could be taught under the umbrella of the Philosophy discipline itself (with no need for a subdivision of PoR) or in the Comparative Religion departments, and especially science classes. Just think of it this way. We don't have PoR classes on Zoroastrianism, Gnosticism, Mithraism, Norse theology, Haitian Voodoo, Paganism etc., in any secular university that I know about. We don't see this for good reasons. Now think real hard about why, okay? The main purpose of the PoR discipline is to examine the evidence and the arguments for religion. Evidence. Arguments. Its main purpose is not merely to get students to understand religion. Rather, it seeks to assess the claims of religion by looking at the evidence (if there is any) and the arguments (if there are any good ones based on the evidence). By contrast, the main purpose of classes in Comparative Religions departments is to understand religion.